Accomplishments

2017

Original Paper

Kidokoro, S., Yoneda, K., Takasaki, H., Takahashi, F., Shinozaki, K.and Yamaguchi-Shinozaki, K. (2017) Different cold-signaling pathways function in the responses to rapid and gradual decreases in temperature, Plant Cell, in press
http://www.ncbi.nlm.nih.gov/pubmed/28351986

Selvaraj, M. G., Ishizaki, T., Valencia, M., Ogawa, S., Dedicova, B., Ogata, T., Yoshiwara, K., Maruyama, K., Kusano, M., Saito, K., Takahashi, F., Shinozaki, K., Nakashima, K.and Ishitani, M. (2017) Overexpression of an Arabidopsis thaliana galactinol synthase gene improves drought tolerance in transgenic rice and increased grain yield in the field, Plant Biotech J., in press
http://www.ncbi.nlm.nih.gov/pubmed/28378532

Soma, F., Mogami, J., Yoshida, T., Abekura, M., Takahashi, F., Kidokoro, S., Mizoi, J., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2017) ABA-unresponsive SnRK2 protein kinases regulate mRNA decay under osmotic stress in plants. Nature plants, 3, 16204.
https://www.ncbi.nlm.nih.gov/pubmed/28059081

Ishii, K., Kazama, Y., Hirano, T., Hamada, M., Ono, Y., Yamada, M, and Abe, T. (2017) AMAP: A pipeline for whole-genome mutation detection in Arabidopsis thaliana. Genes Genet. Syst., 91, 229-233.
https://www.ncbi.nlm.nih.gov/pubmed/27452041

Urano, K., Maruyama, K., Jikumaru, Y., Kamiya, Y., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2017) Analysis of plant hormone profiles in response to moderate dehydration stress. Plant J., 90, 17-36.
http://www.ncbi.nlm.nih.gov/pubmed/27995695

Todaka, D., Zhao, Y., Yoshida, T., Kudo, M., Kidokoro, S., Mizoi, J., Kodaira, K. S., Takebayashi, Y., Kojima, M., Sakakibara, H., Toyooka, K., Sato, M., Fernie, A. R., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2017) Temporal and spatial changes in gene expression, metabolite accumulation and phytohormone content in rice seedlings grown under drought stress conditions. Plant J., 90, 61-78.
http://www.ncbi.nlm.nih.gov/pubmed/28019048

Review Paper

Ohama, N., Sato, H., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2017) Transcriptional Regulatory Network of Plant Heat Stress Response. Trends Plant Sci, 22, 53-65.
https://www.ncbi.nlm.nih.gov/pubmed/28059081

Kikuchi, J. and Komatsu, T.(2017) Polysaccharides as major carbon sources in environmental biodiversity" NMR in Glycoscience and Glycotechnology, in press.

2016

Original Paper

Ohama, N., Kusakabe, K., Mizoi, J., Zhao, H., Kidokoro, S., Koizumi, S., Takahashi, F., Ishida, T., Yanagisawa, S., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2016) The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression. Plant Cell, 28, 181-201. .
https://www.ncbi.nlm.nih.gov/pubmed/26715648

Sato, H., Todaka, D., Kudo, M., Mizoi, J., Kidokoro, S., Zhao, Y., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2016) The Arabidopsis transcriptional regulator DPB3-1 enhances heat stress tolerance without growth retardation in rice. Plant Biotech J., 14, 1765-1767.
https://www.ncbi.nlm.nih.gov/pubmed/26841113

Marinho, J., Kanamori, H., Ferreira, L., Fuganti-Pagliarini, R., Carvalho, J., Freitas, R., Marin, S., Rodrigues, F., Mertz-Henning, L., Farias, J., Neumaier, N., de Oliveira, M., Marcelino-Guimaraes, F., Yoshida, T., Fujita, Y., Yamaguchi-Shinozaki, K., Shinozaki, K., Nakashima, K. and Nepomuceno, A. (2016) Characterization of Molecular and Physiological Responses Under Water Deficit of Genetically Modified Soybean Plants Overexpressing the AtAREB1 Transcription Factor. Plant Molecular Biology Reporter, 34, 410-426.
http://link.springer.com/article/10.1007/s11105-015-0928-0

Honna, P. T., Fuganti-Pagliarini, R., Ferreira, L., Molinari, M. D. C., Marin, S. R. R., de Oliveira, M., Farias, J., Neumaier, N., Mertz-Henning, L., Kanamori, N. N., Kazuo, Takasaki, H., Urano, K., Shinozaki, K., Yamaguchi-Shinozaki, K., Desidero, J. A. and Nepomuceno, A. (2016) Molecular, physiological, and agronomical characterization, in greenhouse and in field conditions, of soybean plants genetically modified with AtGolS2 gene for drought tolerance. Moleculer Breeding, 36, 157.
http://link.springer.com/article/10.1007/s11032-016-0570-z

Sanchez-Rangel, D., Chavez-Martinez, A. I., Rodriguez-Hernandez, A. A., Maruri-Lopez, I., Urano, K., Shinozaki, K. and Jimenez-Bremont, J. F. (2016) Simultaneous Silencing of Two Arginine Decarboxylase Genes Alters Development in Arabidopsis. Front Plant Sci., 7, 300.
https://www.ncbi.nlm.nih.gov/pubmed/27014322

Takahagi, K., Uehara-Yamaguchi, Y., Yoshida, T., Sakurai, T., Shinozaki, K., Mochida, K. and Saisho, D. (2016) Analysis of single nucleotide polymorphisms based on RNA sequencing data of diverse bio-geographical accessions in barley. Sci Rep, 6, 33199.
https://www.ncbi.nlm.nih.gov/pubmed/27616653

Kuwahara, H., Yuki, M., Izawa, K., Ohkuma, M. and Hongoh, Y. (2016) Genome of 'Ca. Desulfovibrio trichonymphae', an H2-oxidizing bacterium in a tripartite symbiotic system within a protist cell in the termite gut. ISME J. 11, 766-776.
https://www.ncbi.nlm.nih.gov/pubmed/27801909

Izawa, K., Kuwahara, H., Kihara, K., Yuki, M., Lo T, N., Ito, Ohkuma, M. and Hongoh, Y. (2016) Comparison of intracellular "Ca. Endomicrobium trichonymphae" genomovars illuminates the requirement and decay of defense systems against foreign DNA. Genome Biol. Evol. 8, 10, 3099-3107.
https://www.ncbi.nlm.nih.gov/pubmed/27635050

Tanimura, A., Takashima, M., Sugita, T., Endoh, R., Ohkuma, M., Kishino, S., Ogawa, J.and Shima, J. (2016) Lipid production through simultaneous utilization of glucose, xylose and L-arabinose by Pseudozyma hubeiensis: a comparative screening study. AMB Express 6, 58.
https://www.ncbi.nlm.nih.gov/pubmed/27566647

Yamada, K., Suzuki, H., Takeuchi, T., Kazama, Y., Mitra, S., Abe, T., Goda, K., Suzuki, K. and Iwata O. (2016) Efficient selective breeding of live oil-rich Euglena gracilis with fluorescence-activated cell sorting. Sci. Rep. 6:26327.
https://www.ncbi.nlm.nih.gov/pubmed/27212384

Okubo-Kurihara, E., Ohtani, M., Kurihara, Y., Kakegawa, K., Kobayashi, M., Nagata, N., Komatsu, T., Kikuchi, J., Cutler, S., Demura, T. and Matsui, M.(2016) Modification of plant cell wall structure accompanied by enhancement of saccharification efficiency using a chemical, lasalocid sodium, Sci. Rep. 6, 34602.
https://www.ncbi.nlm.nih.gov/pubmed/27694977

Sasaki, K., Okamoto, M., Shirai, T., Tsuge, Y., Fujino, A., Sasaki, D., Morita, M., Matsuda, F., Kikuchi, J. and Kondo, A. (2016) Toward the complete utilization of rice straw: Methane fermentation and lignin recovery by a combinational process involving mechanical milling, supporting material, and nanofiltration, Bioresource Technol. 216, 830-837.
https://www.ncbi.nlm.nih.gov/pubmed/27318161

Teramura, H., Sasaki, K., Oshima, T., Aikawa, S., Matsuda, F., Okamoto, M., Shirai, T., Kawaguchi, H., Ogino, C., Hirano, K., Sazuka, T., Kitano, H., Kikuchi, J. and Kondo, A.(2016) Organosolv pretreatment of sorghum bagasse using a low concentration of hydrophobic solvents such as 1-butanol or 1-pentanol, Biotech. Biofuels 9, 27.
https://www.ncbi.nlm.nih.gov/pubmed/26839590

Ogura, T., Date, Y., Masukujane, M., Coetzee, T., Akashi, K. and Kikuchi, J.(2016) Improvement of physical, chemical, and biological properties of aridisol from Botswana by incorporation of torrefied biomass, Sci. Rep. 6, 28011.
https://www.ncbi.nlm.nih.gov/pubmed/27313139

2015

Original Paper

Takasaki, H., Maruyama, K., Takahashi, F., Fujita, M., Yoshida, T., Nakashima, K., Myouga, F., Toyooka, K., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2015) SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 84, 1114-1123.
http://www.ncbi.nlm.nih.gov/pubmed/26518251

Onda, Y., Hashimoto, K., Yoshida, T., Sakurai, T., Sawada, Y., Hirai, M. Y., Toyooka, K., Mochida, K. and Shinozaki, K. (2015a) Determination of growth stages and metabolic profiles in Brachypodium distachyon for comparison of developmental context with Triticeae crops. Proc Biol Sci / The Royal Society, 282, 1811.
http://www.ncbi.nlm.nih.gov/pubmed/26156770

Takahashi, F., Tilbrook, J., Trittermann, C., Berger, B., Roy, S. J., Seki, M., Shinozaki, K. and Tester, M. (2015) Comparison of Leaf Sheath Transcriptome Profiles with Physiological Traits of Bread Wheat Cultivars under Salinity Stress. PloS one, 10, e0133322.
http://www.ncbi.nlm.nih.gov/pubmed/26244554

Onda, Y., Mochida, K., Yoshida, T., Sakurai, T., Seymour, RS., Umekawa, Y., Pirintsos, SA., Shinozaki, K. and Ito, K. (2015) Transcriptome analysis of thermogenic Arum concinnatum reveals the molecular components of floral scent production. Sci Rep., 5, 8753.
http://www.ncbi.nlm.nih.gov/pubmed/25736477

Yuki, M., Kuwahara, H., Shintani, M., Izawa, K., Sato, T., Starns, D., Hongoh, Y., Ohkuma, M. (2015) Dominant ectosymbiotic bacteria of cellulolytic protists in the termite gut also have the potential to digest lignocellulose, Environ Micobiol, 17, 4942-4963.
http://www.ncbi.nlm.nih.gov/pubmed/26079531

Ohkuma, M., Noda, S., Hattori, S., Iida, T., Yuki, M., Starns D., Inoue, J., Darby AC., Hongoh Y. (2015) Acetogenesis from H2 plus CO2 and nitrogen fixation by an endosymbiotic spirochete of a termite-gut cellulolytic protist, Proc Natl Acad Sci USA., 112, 10224-10230.
http://www.ncbi.nlm.nih.gov/pubmed/25979941

Noguchi, S., Eitoku, M., Moriya, S., Kondo, S., Kiyosawa, H., Watanabe, T., Suganuma, N. (2015) Regulation of Gene Expression by Sodium Valproate in Epithelial-to-Mesenchymal Transition, Lung, 193, 691-700.
http://www.ncbi.nlm.nih.gov/pubmed/26286207

Kakei, Y., Mochida, K., Sakurai, T., Yoshida, T., Shinozaki, K. and Shimada, Y. (2015) Transcriptome analysis of hormone-induced gene expression in Brachypodium distachyon. Sci Rep, 5, 14476.
http://www.ncbi.nlm.nih.gov/pubmed/26419335

Review Paper

Kigawa, R., M. Yuki, Y. Sato, R. Endoh, Y. Komine, M. Harada, and M. Ohkuma. 2015. Cellulase activity of larbae of a deathwatch beetle Priobium cylindricum which severely damage wooden historic buildings. (in Japanese) Science for Conservation 54: 145-159.

2014

Original Paper

Miyazaki Y, Maruyama Y, Chiba Y, Kobayashi MJ, Joseph B, Shimizu KK, Mochida K, Hiura T, Kon H, Satake A. (2014) Nitrogen as a key regulator of flowering in Fagus crenata: understanding the physiological mechanism of masting by gene expression analysis. Ecol Lett, 17, 1299-1309.
http://www.ncbi.nlm.nih.gov/pubmed/25103959

Chien Van Ha, Maryam Nasr Esfahani, Watanabe Y, Uyen Thi Tran, Sulieman S, Mochida K, Dong Van Nguyen, Tran L-S P (2014) Genome-Wide Identification and Expression Analysis of the CaNAC Family Members in Chickpea during Development, Dehydration and ABA Treatments. Plos One, 9, e114107.
http://www.ncbi.nlm.nih.gov/pubmed/25479253

Tsukagoshi, H., Nakamura, A., Ishida, T., Touhara, KK., Otagiri, M., Moriya, S., Samejima, M., Igarashi, K., Fushinobu, S., Kitamoto, K. and Arioka, M.(2014) Structural and biochemical analyses of glycoside hydrolase family 26 β-mannanase from a symbiotic protist of the termite Reticulitermes speratus., J Biol Chem., 289, 10843-10852.
http://www.ncbi.nlm.nih.gov/pubmed/24570006

Tsukagoshi H, Nakamura A, Ishida T, Otagiri M, Moriya S, Samejima M, Igarashi K, Kitamoto K, Arioka M.(2014) The GH26 β-mannanase RsMan26H from a symbiotic protist of the termite Reticulitermes speratus is an endo-processive mannobiohydrolase: heterologous expression and characterization., Biochem Biophys Res Commun., 452, 520-525.
http://www.ncbi.nlm.nih.gov/pubmed/25173929

Kudo, T., Kidera, A., Kida, M., Kawauchi, A., Shimizu, R., Nakahara, T., Zhang, X,, Yamada, A., Amano, M., Hamada, Y., Taniyama, S., Arakawa, O., Yoshida, A., Oshima, K., Suda, W., Kuwahara, H., Nogi, Y., Kitamura, K., Yuki, M., Iida, T., Moriya, S., Inoue, T., Hongoh, Y., Hattori, M. and Ohkuma, M. (2014) Draft Genome Sequences of Psychrobacter Strains JCM 18900, JCM 18901, JCM 18902, and JCM 18903, Isolated Preferentially from Frozen Aquatic Organisms, Genome Announc. e00280-14.
http://www.ncbi.nlm.nih.gov/pubmed/24699965

Himuro, Y., Kshiyama K., Mori, F., Gondo, T., Takahashi, F., Shinozaki, K., Kobayashi, M. and Akashi, R. (2014)Arabidopsis galactinol synthase AtGolS2 improves drought tolerance in the monocot model Brachypodium distachyon, J. plant Physiol., 171, 1127-1131.
http://www.ncbi.nlm.nih.gov/pubmed/24973584

Ohkuma, M., Yuki, M., Oshima, K., Suda, W., Oshida, Y., Kitamura, K., Iida, T. and Hattori, M. (2014) Draft Genome Sequence of an Alkaliphilic and Xylanolytic Paenibacillus sp. Strain JCM 10914, Isolated from the Gut of a Soil-Feeding Termite, Genome Announcements, 2, e01144-13.
http://www.ncbi.nlm.nih.gov/pubmed/24459258

Yuki, M., Oshima, K., Suda, W., Oshida, Y., Kitamura, K., Iida, T., Hattori, M. and Ohkuma M. (2014) Draft Genome Sequences of Three Alkaliphilic Bacillus strains, Bacillus wakoensis JCM 9140T, Bacillus akibai JCM 9157T, and Bacillus hemicellulosilyticus JCM 9152T, Genome Announcements, 2, e01258-13.
http://www.ncbi.nlm.nih.gov/pubmed/24482522

Review Paper

Fujita, M. and Shinozaki, K. (2014) Identification of polyamine transporters in plants: paraquat transport provides crucial clues. Plant Cell Physiol., 55, 855-861.
http://www.ncbi.nlm.nih.gov/pubmed/24590488

Osakabe, Y., Osakabe, K., Shinozaki, K. and Tran, L. S. (2014a) Response of plants to water stress. Front Plant Sci., 5, 86.
http://www.ncbi.nlm.nih.gov/pubmed/24659993

Osakabe, Y., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L. S. (2014b) ABA control of plant macroelement membrane transport systems in response to water deficit and high salinity. New Phytol., 202, 35-49.
http://www.ncbi.nlm.nih.gov/pubmed/24283512

Nakashima, K., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2014) The transcriptional regulatory network in the drought response and its crosstalk in abiotic stress responses including drought, cold, and heat. Front Plant Sci., 5, 170.
http://www.ncbi.nlm.nih.gov/pubmed/24904597

Book

Umezawa, T., Takahashi, F. and Shinozaki, K. (2014) Phosphorylation networks in the abscisic acid signaling pathway. The Enzymes "Signaling Pathways in Plants", Machida, Y., Lin, C. and Tamanoi, F ed, Elsevier, 35, 27-56.

2013

Original Paper

Sakamoto M, Ohkuma M. (2013) Bacteroides reticulotermitis sp. nov., isolated from the gut of the subterranean termite (Reticulitermes speratus). Int. J. Syst. Evol. Microbiol. 63: 691-695.
http://www.ncbi.nlm.nih.gov/pubmed/22544795

Onda, Y., Tsuchiya, Y.N., Kazama, Y., Abe, T., Mochida, K. and Shinozaki, K. (2013) Effects of heavy-ion beam irradiation on Brachypodium distachyon. RIKEN Accelerator Progress Report, in press.

Ha, C. V., Le, D. T., Nishiyama, R., Watanabe, Y., Sulieman, S., Tran, U. T., Mochida, K., Dong, N. V., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L. S. (2013) The Auxin Response Factor Transcription Factor Family in Soybean: Genome-Wide Identification and Expression Analyses During Development and Water Stress. DNA Res., 20, 511-524.
http://www.ncbi.nlm.nih.gov/pubmed/23810914

Mochida, K., Uehara-Yamaguchi, Y., Takahashi, F., Yoshida, T., Sakurai, T. and Shinozaki, K. (2013) Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with pooideae sequence resources. PloS one, 8, e75265.
http://www.ncbi.nlm.nih.gov/pubmed/24130698

Sakurai, T., Mochida, K., Yoshida, T., Akiyama, K., Ishitani, M., Seki, M. and Shinozaki, K. (2013) Genome-wide discovery and information resource development of DNA polymorphisms in cassava. PloS one, 8, e74056.
http://www.ncbi.nlm.nih.gov/pubmed/24040164

Ramilowski JA, Sawai S, Seki H, Mochida K, Yoshida T, Sakurai T, Muranaka T, Saito K, Daub CO. (2013) Glycyrrhiza uralensis transcriptome landscape and study of phytochemicals. Plant Cell Physiol., 54, 697-710.
http://www.ncbi.nlm.nih.gov/pubmed/23589666

Umezawa, T., Sugiyama, N., Takahashi, F., Anderson, J. C., Ishihama, Y., Peck, S. C. and Shinozaki, K. (2013) Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana. Science signaling, 6(270), rs8.
http://www.ncbi.nlm.nih.gov/pubmed/23572148

Otagiri M, Lopez CM, Kitamoto K, Arioka M, Kudo T, Moriya S. (2013)Heterologous expression and characterization of a glycoside hydrolase family 45 endo-β-1,4-glucanase from a symbiotic protist of the lower termite, Reticulitermes speratus. Appl Biochem Biotechnol. 169(6):1910-1918.
http://www.ncbi.nlm.nih.gov/pubmed/23354496

Komatsu, T. and Kikuchi, J. "Comprehensive signal assignment of 13C-labeled lignocellulose using multidimensional solution NMR and 13C chemical shift comparison with solid-state NMR" Anal.Chem. 85, 8857-8865 (2013).
http://www.ncbi.nlm.nih.gov/pubmed/24010724

Komatsu, T. and Kikuchi, J. (2013) Selective signal detection in solid-state NMR using rotor synchronized dipolar dephasing for the analysis of hemicellulose in lignocellulosic biomass, J. Phys. Chem. Lett. 4, 2279-2283.

Ogura, T., Date, Y. and Kikuchi, J. (2013)Differences in cellulosic supramolecular structure of compositionally similar rice straw affect biomass metabolism by paddy soil microbiota, PLoS ONE 8, e66919 .
http://www.ncbi.nlm.nih.gov/pubmed/23840554

Mochida, K*., Yoshida, T., Sakurai, T., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L.S. (2013) TreeTFDB: an integrative database of the transcription factors from six economically important tree crops for functional predictions and comparative and functional genomics, DNA Res, 20, 151-162.
http://www.ncbi.nlm.nih.gov/pubmed/23284086

Yamamura, M., Noda, S., Hattori, T., Shino, A., Kikuchi, J., Takabe, K., Tagane, S., Gau, M., Uwatoko, N., Mii, M., Suzuki, S., Shibata, D. and Umezawa, T. (2013) Characterization of lignocellulose of Erianthus arundinaceus in relation to enzymatic saccharification efficiency. Plant Biotechnol. 30, 25-35.

Otagiri M, Lopez CM, Kitamoto K, Arioka M, Kudo T, Moriya S, (2013) Heterologous Expression and Characterization of a Glycoside Hydrolase Family 45 endo-β-1,4-Glucanase from a Symbiotic Protist of the Lower Termite, Reticulitermes speratus Appl Biochem Biotechnol, 169, 1910-1918.
http://www.ncbi.nlm.nih.gov/pubmed/23354496

Review Paper

Mochida, K. and Shinozaki, K. (2013) Unlocking Triticeae genomics to sustainably feed the future. Plant Cell Physiol., 54, 1931-1950.
http://www.ncbi.nlm.nih.gov/pubmed/24204022

2012

She, K-C., Yaeshima, M., Koumoto, T., Ohnuma, M., Hiromasa, T., Hirai, M., Matsunaga, T., Tashiro, R., Sasaki, T., Kusano, H. and Shimada, H. (2012) High-temperature stress susceptibility of representative japonica rice cultivars derived from Norin-22: inadequate ATP supply during seed development may lead to severe damage., Plant Biotechnology, 29(5), 465-471.

Sakurai, N., Ogata, Y., Ara, T., Sano, R., Akimoto, N., Suzuki, H., Kajikawa, M., Widyastuti, W., Suharsono, S., Yokota, A., Akashi, K., Kikuchi, J. and Shibata, T. (2012) Development of KaPPA-View4 for omics studies on Jatropha and a database system KaPPA-Loader for construction of local omics databases" Plant Biotechnol 29(2) 131-135.

Utsumi Y, Tanaka M, Morosawa T, Kurotani A, Yoshida T, Mochida K, Matsui A, Umemura Y, Ishitani M, Shinozaki K, Sakurai T, Seki M.(2012) Transcriptome analysis using a high-density oligomicroarray under drought stress in various genotypes of cassava: an important tropical crop. DNA Res, 19, 335-45
http://www.ncbi.nlm.nih.gov/pubmed/22619309

　

Teramura, H., Enomoto, Y., Aoki, H., Sasaki, T. and Shimada, H. (2012)　A long 5'UTR of the rice OsMac1 mRNA enabling the sufficient translation of the downstream ORF., Plant Biotechnology, 29: 43-49

Everroad RC, Yoshida S, Tsuboi Y, Date Y, Kikuchi J, Moriya S. (2012) Concentration of metabolites from low-density planktonic communities for environmental metabolomics using nuclear magnetic resonance spectroscopy. J Vis Exp. 7;(62):e3163
http://www.ncbi.nlm.nih.gov/pubmed/22508363

Mori, T. Chikayama, E., Tsuboi, Y., Ishida, N., Shisa, N., Moriya, S., and Kikuchi, J. (2012) Exploring conformational space of amorphous cellulose based on NMR chemical shifts. Carbohydr. Polymers. 90: 1197-1203.
http://www.ncbi.nlm.nih.gov/pubmed/22939331

Okushita, K., Komatsu, T., Chikayama, E. and Kikuchi, J. (2012) Statistical approach for solid-state NMR spectra of a cellulose derived from a series of variable parameters. Polymer J. 44: 895-900.

Okushita, K., Chikayama, E. and Kikuchi, J. (2012) Solubilization mechanism and characterization of the structural change of bacterial cellulose in regenerated states through ionic liquid treatment. Biomacromolecules. 13: 1323-1333.
http://www.ncbi.nlm.nih.gov/pubmed/22489745

Watanabe, T., Shino, A., Akashi, K. and Kikuchi, J. (2012) Spectroscopic investigation of tissue-specific biomass profiling of Jatropha curcas. L. Plant Biotechnol. 29: 163-170 .

Date, Y., Sakata, K. and Kikuchi, J. (2012) Chemical profiling of complex biochemical mixtures from various seaweeds. Polymer J. 44: 888-894.

Ogata, Y., Chikayama, E., Morioka, Y., Everroad, R.C., Shino, A., Matsushima, A., Haruna, H., Moriya, S., Toyoda, T., and Kikuchi, J. (2012) ECOMICS: A web-based toolkit for investigating the biomolecular web in ecosystems using a trans-omics approach. PLoS ONE. 7, e30263.
http://www.ncbi.nlm.nih.gov/pubmed/22319563

Everroad, C. R., Yoshida, S., Tsuboi, Y., Date, Y., Kikuchi, J. and Moriya, S. (2012) Concentration of metabolites from low-density planktonic communities for environmental metabolomics using nuclear magnetic resonance spectroscopy. J. Vis. Exp. e3163.
http://www.ncbi.nlm.nih.gov/pubmed/22508363

Date, Y., Iikura, T., Yamazawa, A., Moriya, S. and Kikuchi, J. (2012) Metabolic sequences of anaerobic fermentation on glucose-based feeding substrates based on correlation analyses of microbial and metabolite profiling" J. Proteome Res. 11: 5602-5610.
http://www.ncbi.nlm.nih.gov/pubmed/23110341

Kazama Y, Ma L, Hirano T, Ohbu S, Shirakawa Y, Hatakeyama S, Tanaka S, Abe T. (2012) Rapid evaluation of effective linear energy transfer in heavy ion utagenesis of Arabidopsis thaliana, Plant Biotechnology 29: 440-444

Hirano T, Kazama Y, Ohbu S, Shirakawa Y, Liu Y, Kambara T, Fukunishi N, Abe T. (2012) Molecular nature of mutations induced by high-LET irradiation with argon and carbon ions in Arabidopsis thaliana, Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 735: 19-31

2011

Himuro, Y., Tanaka, H., Hashiguchi, M., Ichikawa, T., Nakazawa, M., Seki, M., Fujita, M., Shinozaki, K., Matsui, M., Akashi, R.and Hoffmann, F. (2011) FOX-superroots of Lotus corniculatus, overexpressing Arabidopsis full-length cDNA, show stable variations in morphological traits, J. Plant Physiol., 168: 181-187.
http://www.ncbi.nlm.nih.gov/pubmed/21106274

Mochida, K., Uehara-Yamaguchi, Y., Yoshida, T., Sakurai, T.and Shinozaki, K. (2011a) Global landscape of a co-expressed gene network in barley and its application to gene discovery in Triticeae crops, Plant Cell Physiol., 52: 785-803.
http://www.ncbi.nlm.nih.gov/pubmed/21441235

Mochida, K., Yoshida, T., Sakurai, T., Yamaguchi-Shinozaki, K., Shinozaki, K.and Tran, L. S. (2011b) In silico analysis of transcription factor repertoires and prediction of stress-responsive transcription factors from six major gramineae plants, DNA Res., 18: 321-332.
http://www.ncbi.nlm.nih.gov/pubmed/21729923

Takahashi F., Mizoguchi T., Yoshida R., Ichimura K. and Shinozaki K. (2011) Calmodulin-dependent activation of MAP kinase for ROS homeostasis in Arabidopsis, Mol. Cell, 4:649-60.
http://www.ncbi.nlm.nih.gov/pubmed/21419340

2010

Umezawa T., Nakashima K., Miyakawa T., Kuromori T., Tanokura M., Shinozaki K. and Yamaguchi-Shinozaki K. (2010) Molecular basis of the core regulatory network in abscisic acid responses: sensing, signaling, and transport, Plant Cell Physiol., 51, 1821-1839.
http://www.ncbi.nlm.nih.gov/pubmed/20980270

Betsuyaku S*., Takahashi F*., Kinoshita A., Miwa H., Shinozaki K., Fukuda H. and Sawa S. (2010) Mitogen-Activated Protein Kinase regulated by the CLAVATA receptors contributes to the shoot apical meristem homeostasis, Plant Cell Physiol, 52, 14-29 (*equally contribution).
http://www.ncbi.nlm.nih.gov/pubmed/20965998

Kuromori T. and Shinozaki K.(2010) ABA transport factors found in Arabidopsis ABC transporters, Plant Signaling & Behavior, 5, 1124-1126.
http://www.ncbi.nlm.nih.gov/pubmed/20935463

Mochida K., Yoshida T., Sakurai T., Yamaguchi-Shinozaki K., Shinozaki K. and Tran L.-S. P. (2010) Genome-wide analysis of two-component systems and prediction of stress-responsive two-component system members in soybean. DNA Res., 17, 303-324.
http://www.ncbi.nlm.nih.gov/pubmed/20817745

Shinozaki K. (2010) The ICAR2010 for development of Arabidopsis research beyond 2010, J Plant Res., 123, 265-266.
http://www.ncbi.nlm.nih.gov/pubmed/20386947

Mizoguchi M., Umezawa T., Nakashima K., Kidokoro S., Takasaki H., Fujita Y., Yamaguchi-Shinozaki K. and Shinozaki K. (2010) Two closely related subclass II SnRK2 protein kinases cooperatively regulate drought-inducible gene expression, Plant Cell Physiol., 51, 842-847.
http://www.ncbi.nlm.nih.gov/pubmed/20375108

Mochida K. and Shinozaki K. (2010) Genomics and bioinformatics resources for crop improvement, Plant Cell Physiol., 51, 497-523.
http://www.ncbi.nlm.nih.gov/pubmed/20208064

Hirayama T. and Umezawa T. (2010) The PP2C-SnRK2 complex: the central regulator of an abscisic acid signaling pathway, Plant Signal Behav., 5, 160-163.
http://www.ncbi.nlm.nih.gov/pubmed/20023393

Urano K., Kurihara Y., Seki K. and Shinozaki K. (2010) 'Omics'analyses of regulatory networks in plant abiotic stress responses, Curr.Opin. Plant Biol., 13, 132-138.
http://www.ncbi.nlm.nih.gov/pubmed/20080055

Hirayama T. and Shinozaki K. (2010) Research on plant abiotic stress responses in the post-genome era: past, present, and future, Plant J, 61, 1041-1062.
http://www.ncbi.nlm.nih.gov/pubmed/20409277

Mochida K, Yoshida T, Sakurai T, Yamaguchi-Shinozaki K, Shinozaki K, Tran LS. (2010) LegumeTFDB: An integrative database of Glycine max, Lotus japonicus and Medicago truncatula transcription factors. Bioinformatics, 26, 290-291.
http://www.ncbi.nlm.nih.gov/pubmed/19933159